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NeuroML / pyNeuroML

A single package in Python unifying scripts and modules for reading, writing, simulating and analysing NeuroML2/LEMS models.
https://docs.neuroml.org/Userdocs/Software/pyNeuroML.html
GNU Lesser General Public License v3.0
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Implement exporting to Neuroglancer formats #369

Open sanjayankur31 opened 1 month ago

sanjayankur31 commented 1 month ago

https://github.com/google/neuroglancer looks very good. Here are some examples: https://h01-release.storage.googleapis.com/gallery.html

It'll be good if we can export to neuroglancer supported formats and setup a way to allow users to use neuroglancer to view models.

spanag commented 1 month ago

At a glance it's not clear how triangular meshes are supported in practice. This may help: https://github.com/seung-lab/cloud-volume This issue and linked ones look related, they are about SWC but diameter is not implemented: https://github.com/google/neuroglancer/issues/169

If "render-tight" meshes are needed (no visible gaps), dev Eden can generate them. If a voxel volume is preferable, triangle count is not a concern, and especially if it should look somewhat natural, this work may help if accessible: https://doi.org/10.1016/j.jneumeth.2013.09.011 (may be the same as in Neuron rxd).