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NeurodataWithoutBorders / matnwb

A Matlab interface for reading and writing NWB files
BSD 2-Clause "Simplified" License
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PhotonSeriesIOTest not passing #105

Closed bendichter closed 5 years ago

bendichter commented 5 years ago 
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Verification failed in tests.system.PhotonSeriesIOTest/testOutToPyNWB.

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    Test Diagnostic:
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    /Users/bendichter/dev/pynwb/src/pynwb/image.py:80: DeprecationWarning: bits_per_pixel is no longer used
      warnings.warn("bits_per_pixel is no longer used", DeprecationWarning)
    E
    ======================================================================
    ERROR: testInFromMatNWB (PyNWBIOTest.PhotonSeriesIOTest)
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    Traceback (most recent call last):
      File "/Users/bendichter/dev/matnwb/+tests/+system/PyNWBIOTest.py", line 33, in testInFromMatNWB
        matcontainer = self.getContainer(matfile)
      File "/Users/bendichter/dev/matnwb/+tests/+system/PyNWBIOTest.py", line 170, in getContainer
        return file.get_acquisition(self.container.name)
    AttributeError: 'NoneType' object has no attribute 'name'

    ----------------------------------------------------------------------
    Ran 1 test in 0.061s

    FAILED (errors=1)

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    Stack Information:
    ------------------
    In /Users/bendichter/dev/matnwb/+tests/+system/PyNWBIOTest.m (PyNWBIOTest.testOutToPyNWB) at 15
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.
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Error occurred in tests.system.PhotonSeriesIOTest/testInFromPyNWB and it did not run to completion.

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    Error ID:
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    'MATLAB:getReshapeDims:notSameNumel'

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    Error Details:
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    Error using reshape
    To RESHAPE the number of elements must not change.

    Error in tests.system.RoundTripTest/verifyContainerEqual (line 73)
                            trueval = reshape(trueval, size(val2));

    Error in tests.system.PyNWBIOTest/testInFromPyNWB (line 28)
          testCase.verifyContainerEqual(pycontainer, matcontainer);
================================================================================
bendichter commented 5 years ago

depends on https://github.com/NeurodataWithoutBorders/pynwb/issues/815