search

NeurodataWithoutBorders / matnwb

A Matlab interface for reading and writing NWB files
BSD 2-Clause "Simplified" License
49 stars 32 forks source link

Different standards for TwoPhotonSeries and PlaneSegmentation's "image_mask" #142

Closed kelsonSS closed 5 years ago

kelsonSS commented 5 years ago

For the Ophys pipeline the raw data that is stored in TwoPhotonSeries is required to be in a Nframes by Y by X matrix while the ROI segmentation is in a NCells by X by Y matrix. This will cause errors and I suggest standardizing to the Nframes by X by Y format.

This problem persists with 3D data and should be standardized to N by X by Y by Z

oruebel commented 5 years ago

Is this a MatNWB-specific issue or is this an issue with the NWB:N schema?

lawrence-mbf commented 5 years ago

This does seem to be a schema-level issue. https://github.com/NeurodataWithoutBorders/nwb-schema/issues/262