For the Ophys pipeline the raw data that is stored in TwoPhotonSeries is required to be in a Nframes by Y by X matrix while the ROI segmentation is in a NCells by X by Y matrix. This will cause errors and I suggest standardizing to the Nframes by X by Y format.
This problem persists with 3D data and should be standardized to N by X by Y by Z
For the Ophys pipeline the raw data that is stored in TwoPhotonSeries is required to be in a Nframes by Y by X matrix while the ROI segmentation is in a NCells by X by Y matrix. This will cause errors and I suggest standardizing to the Nframes by X by Y format.
This problem persists with 3D data and should be standardized to N by X by Y by Z