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NeurodataWithoutBorders / nwb-guide

NWB GUIDE is a desktop app that provides a no-code user interface for converting neurophysiology data to NWB.
https://nwb-guide.readthedocs.io/
MIT License
22 stars 3 forks source link

Upload failed #645

Closed bendichter closed 8 months ago

bendichter commented 8 months ago

Describe the issue

image

Steps to Reproduce

I just went through the tutorial

Operating System

OSX

GUIDE Version

main

Code of Conduct

Yes

Did you confirm this issue was not already reported?

Yes

bendichter commented 8 months ago 
Traceback (most recent call last):
  File "/Users/bendichter/dev/nwb-guide/pyflask/apis/neuroconv.py", line 163, in post
    return upload_project_to_dandi(**upload_options)
  File "/Users/bendichter/dev/nwb-guide/pyflask/manageNeuroconv/manage_neuroconv.py", line 627, in upload_project_to_dandi
    return automatic_dandi_upload(
  File "/Users/bendichter/dev/neuroconv/src/neuroconv/tools/data_transfers/_dandi.py", line 60, in automatic_dandi_upload
    from dandi.download import download as dandi_download
  File "/Users/bendichter/opt/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/dandi/download.py", line 22, in <module>
    from dandischema.models import DigestType
  File "/Users/bendichter/opt/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/dandischema/__init__.py", line 2, in <module>
    from .metadata import migrate, validate
  File "/Users/bendichter/opt/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/dandischema/metadata.py", line 17, in <module>
    from . import models
  File "/Users/bendichter/opt/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/dandischema/models.py", line 24, in <module>
    from .digests.zarr import ZARR_CHECKSUM_PATTERN, parse_directory_digest
  File "/Users/bendichter/opt/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/dandischema/digests/zarr.py", line 164, in <module>
    EMPTY_CHECKSUM = ZarrJSONChecksumSerializer().generate_listing(ZarrChecksums()).digest
  File "/Users/bendichter/opt/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/dandischema/digests/zarr.py", line 153, in generate_listing
    digest = self.aggregate_digest(checksums)
  File "/Users/bendichter/opt/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/dandischema/digests/zarr.py", line 112, in aggregate_digest
    content = checksums.json(**ENCODING_KWARGS)  # type: ignore[arg-type]
  File "/Users/bendichter/opt/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/pydantic/main.py", line 1056, in json
    raise TypeError('`dumps_kwargs` keyword arguments are no longer supported.')
TypeError: `dumps_kwargs` keyword arguments are no longer supported.
bendichter commented 8 months ago

trying updating dandischema...

bendichter commented 8 months ago

this appears to have worked

CodyCBakerPhD commented 8 months ago

If you haven't already, I recommend generating an entire fresh nwb-guide conda environment. A lot of dependencies have updated depending on the last time you set it up