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NeurodataWithoutBorders / nwb-overview

Introduction to NWB software
https://nwb-overview.readthedocs.io/
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Consider adding Blue Brain Project to data list #124

Open rly opened 11 months ago

rly commented 11 months ago

We currently have a page for example data here: https://www.nwb.org/example-datasets/ We could update that (or create a new page here) for the following:

The Blue Brain Project has a large collection of icephys data:

Thalamic control of sensory processing and spindles in a biophysical somatosensory thalamoreticular circuit model of wakefulness and sleep: https://bbp.epfl.ch/nexus/web/studios/public/thalamus/studios/https%3A%2F%2Fbbp.epfl.ch%2Fneurosciencegraph%2Fdata%2Fe9ceee28-b2c2-4c4d-bff9-d16f43c3eb0f?workspaceId=https%3A%2F%2Fbbp.epfl.ch%2Fneurosciencegraph%2Fdata%2F52e9c443-534b-4b2f-bd6a-ad340ae10d00&dashboardId=https%3A%2F%2Fbbp.epfl.ch%2Fneurosciencegraph%2Fdata%2Fcaea33ce-2333-40af-a9cb-3149077f1ec9

Hippocampus data: https://bbp.epfl.ch/nexus/web/studios/public/hippocampus-hub/studios/https%3A%2F%2Fbbp.epfl.ch%2Fneurosciencegraph%2Fdata%2Fbe829d11-ddd3-4d71-bf6a-a826249b1d9c?workspaceId=https%3A%2F%2Fbbp.epfl.ch%2Fneurosciencegraph%2Fdata%2F6a26c98c-c14e-453b-b45c-86374275f6d3&dashboardId=https%3A%2F%2Fbbp.epfl.ch%2Fneurosciencegraph%2Fdata%2F453b4c5e-13b1-42a1-8787-f38eac503713

For the hippocampus data, select the "Neuron electrophysiology" tab first. Select a dataset, add to cart, click NWB checkbox in cart at bottom of screen, download

Also they have quite the ontology and ontological annotation of their data (see the JSON that is downloaded)

oruebel commented 11 months ago

We could update that (or create a new page here) for the following:

I would suggest the following: 1) Add a section to the community gallery on highlight datasets, 2) Similar to the analysis and vis tools pages https://www.nwb.org/tools/, we could updated the nwb.org to give a high-level overview of public data and point to DANDI and the gallery on nwb-overview for details, 3) move (some of) the highlight examples from the nwb.org data page to nwb-overview. I think it make sense to have page on datasets on both nwb.org and nwb-overview since nwb.org is a main entry point for folks to find more information. But I think it's fine for the nwb.org page to be more high-level and point to the relevant resources on nwb-overview and DANDI.