Missing ndx-mies namespace error

NeurodataWithoutBorders / nwb_benchmarks

Benchmarking for NWB-related operations.

https://nwb-benchmarks.readthedocs.io/en/latest/

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Missing ndx-mies namespace error #68

Open oruebel opened 2 months ago

oruebel commented 2 months ago

I tried running the benchmark from the current dev branch and am seeing the following errors:

https://dandi-api-staging-dandisets.s3.amazonaws.com/blobs/8b1/f9e/8b1f9e4e-c5bb-4c25-acee-3c99327aa841     data_00002_AD0                        (slice(0, 30000, None),)                       failed

fails with KeyError: "'ndx-mies' not a namespace". Maybe this is because the `load_namespaces=True`` option was removed? Several other tests (probably for the same file) fail with the same error.

rly commented 2 months ago

@oruebel please recreate your environment. the newest pynwb automatically loads namespaces (and the new environment points to particular versions of pynwb, hdmf, and lindi)