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Neuroinflab / kCSD-python

Kernel Current Source Density
https://kcsd-python.readthedocs.io/en/latest/
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Publish to PyPI? #138

Closed grahamfindlay closed 7 months ago

grahamfindlay commented 2 years ago

Any chance that the 2.0 release could be published to PyPI? I have a package foo that depends on kcsd, but I cannot upload foo to PyPI, because PyPI will not accept git URL dependencies. Of course I could fork and publish myself, but I maybe a project author would prefer to? Thanks -Graham

m-kowalska commented 2 years ago

Hi Graham, sure, we should do this. We are currently cleaning the code for publication and we would prepare to publish on PyPi a cleaned up version. We realized there are some problems with Binder we would like to fix, and they might affect the code. Is it enough for you if we do this by end of August? Marta & Daniel

grahamfindlay commented 1 year ago

Oh sure, no hurry at all! You could also upload it to PyPI as a pre-release, in which case people would install it like pip install kcsd --pre. Thanks for having the code available, it's been really useful for some of my projects :)

alejoe91 commented 10 months ago

Hi guys! Any update on this? @grahamfindlay developed a preprocessor for Neuropixels data based on this repo and we would love to include it into SpikeInterface main. Relying on a pip-installable version would be great!

ccluri commented 7 months ago

Attempting to do this https://github.com/Neuroinflab/kCSD-python/tree/pypiinstall

issues with conda (order of installing); must install matplotlib first and it doesn't seem to resolve itself. working on this.

ccluri commented 7 months ago

pip install kcsd

now works.