Corrected CSD interpolation for complex morphologies. Implemented correct calculation of the contribution to the extracellular potential from a basis source ~bi(s) (eq. 17, doi: 10.7554/eLife.29384) in function forward_model_3D. function forward_model_1D calculates contribution of a specified source in a specified point on the morphology loop (used in potential estimation). The code for calculation of estimation points and distances has been refactored and moved either to sKCSDcell or utility_fuctions and tests added.
Integration using skmonaco has been removed due to inactivity of scikit-monaco.
Code for figures 8, 9, 10 of doi: 10.7554/eLife.29384 has been added.
Corrected CSD interpolation for complex morphologies. Implemented correct calculation of the contribution to the extracellular potential from a basis source ~bi(s) (eq. 17, doi: 10.7554/eLife.29384) in function forward_model_3D. function forward_model_1D calculates contribution of a specified source in a specified point on the morphology loop (used in potential estimation). The code for calculation of estimation points and distances has been refactored and moved either to sKCSDcell or utility_fuctions and tests added.
Integration using skmonaco has been removed due to inactivity of scikit-monaco.
Code for figures 8, 9, 10 of doi: 10.7554/eLife.29384 has been added.