Neuroinflab / kCSD-python

Kernel Current Source Density
https://kcsd-python.readthedocs.io/en/latest/
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Add sKCSD tutorial #88

Closed asiaszmek closed 5 years ago

asiaszmek commented 5 years ago

Add jupyter notebook file with a sKCSD and sKCSDcell tutorial.

Fix loop position coordinates in kernel calculation, update tests and sKCSD article figures. Fix loop to 3D transformations of csd and potential.

coveralls commented 5 years ago

Pull Request Test Coverage Report for Build 256


Changes Missing Coverage Covered Lines Changed/Added Lines %
kcsd/validation/plotting_functions.py 0 1 0.0%
kcsd/tests/test_sKCSDcell.py 10 14 71.43%
kcsd/sKCSD.py 28 59 47.46%
<!-- Total: 44 80 55.0% -->
Files with Coverage Reduction New Missed Lines %
kcsd/sKCSD.py 1 84.29%
kcsd/sKCSD_utils.py 1 67.5%
kcsd/tests/test_sKCSDcell.py 3 94.49%
<!-- Total: 5 -->
Totals Coverage Status
Change from base Build 255: -0.4%
Covered Lines: 1808
Relevant Lines: 2898

💛 - Coveralls
ccluri commented 5 years ago

import pickle from scipy import interpolate import sys

imported and unused, here and in utils.py