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Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS

CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
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Can CONICS be used with 3'- tag sequencing methods ? #34

Open moutazhelal opened 3 years ago

moutazhelal commented 3 years ago

Hello, thank you for developing this package.

I would like to use CONICS in my project but I was faced with the question Can CONICS be used on data generated from a 3'- tag sequencing protocol like Chromium from 10x Genomics? are there any differences regarding the results between data generated from a whole length RNA sequencing protocol and 3'- tag sequencing protocol?

I would appreciate any help

diazlab commented 3 years ago

Yes, conics can be used with 10x data with no changes.

Good luck

From: Moutaz Helal notifications@github.com Sent: Wednesday, March 10, 2021 7:40:26 AM To: diazlab/CONICS CONICS@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [diazlab/CONICS] Can CONICS be used with 3'- tag sequencing methods ? (#34)

Hello, thank you for developing this package.

I would like to use CONICS in my project but I was faced with the question Can CONICS be used on data generated from a 3'- tag sequencing protocol like Chromium from 10x Genomics? are there any differences regarding the results between data generated from a whole length RNA sequencing protocol and 3'- tag sequencing protocol?

I would appreciate any help

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