Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS

CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
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Few tumor cell #39

Open sunshine1126 opened 2 years ago

sunshine1126 commented 2 years ago

Hello, Thank you for your software. When I used the plotHistogram function to identify tumor cells for scATAC-seq data, I found that only a small part of cells was identified as tumor cells which may be incorrect. There are too many normal cells!

plotHistogram=plotHistogram(l,suva_expr,clusters=2,zscoreThreshold=4) normal= which(hi==1) ## 1354 tumor=which(hi!=1) ## 48 image