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Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS

CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
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Error in string.to.colors() in Tutorial #9

Closed erin-d closed 4 years ago

erin-d commented 5 years ago

In the tutorial for Tutorial CONICSmat: Inference of clones in GBM single cell data from Darmanis et al, the following command produces the error below.

pcol=string.to.colors(patients)[c(normal,tumor)]

Error in string.to.colors(patients) : could not find function "string.to.colors"

I looked it up and it seems to be a function from the fifer package, fails to install, because it is not avaliable for R version 3.6.0

Any ideas for how to resolve this issue or is there a different command to run instead that doesn't require this package?

soerenmueller commented 5 years ago

Hey,

thanks for noticing! I fixed the issue by adding the method to the package. Should work now if you re-install CONICSmat

Cheers, Soren

erin-d commented 5 years ago

Hi, I removed the package, restarted R, and reinstalled it, and am still having the same issue. Thanks, Erin

faculty commented 5 years ago

You can refer to https://github.com/cran/fifer for installing fifer.