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Nextomics / NextPolish

Fast and accurately polish the genome generated by long reads.
GNU General Public License v3.0
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error of generate_lqseqs_from_cluster #110

Closed fangdm closed 1 year ago

fangdm commented 1 year ago

Hi, I got the error information as follow :

[INFO] 2023-03-15 13:47:31,472 Start a corrected worker in 2647 from parent 2587 python3.9: ctg_cns.c:601: generate_lqseqs_from_cluster: Assertion `lqseq->start == clu->r.s' failed. [INFO] 2023-03-15 13:52:03,905 Start a corrected worker in 3468 from parent 2587

and then the process was suspended. After checking, only one contig had got the exeption and all the others are OK. how can i solve the problem?

thank you.

version: nextPolish v1.3.1 The error generated in 04.polish.ref.sh.work/ while running the script nextpolish2.py.

moold commented 1 year ago

The easiest way is to copy the original contig into the final result

fangdm commented 1 year ago

Thank you.

so, why did it happen? i check the sequence, it was not the longest one, it had no special characterand, it had the similar GC content compare with others, also it had the mapping result.

moold commented 1 year ago

I have no idea about this and I have to reproduce this bug so I can find what happened？