Question or Expected behavior
My genome contains 10 gap with each 100 bp, and polished genome contains no gap and became shorter.
So, How NextPolish v1.4 treat gap in genome ?
Operating system
Linux pbsnode01 3.10.0-1127.19.1.el7.x86_64 #1 SMP Tue Aug 25 17:23:54 UTC 2020 x86_64 GNU/Linux
GCC
gcc version 4.8.5 20150623 (Red Hat 4.8.5-44) (GCC)
Python
Python 2.7.13 :: Continuum Analytics, Inc.
NextPolish
nextPolish v1.4.0
Additional context (Optional)
Add any other context about the problem here.
moold
commented
2 years ago
Question or Expected behavior My genome contains 10 gap with each 100 bp, and polished genome contains no gap and became shorter. So, How NextPolish v1.4 treat gap in genome ?
Operating system Linux pbsnode01 3.10.0-1127.19.1.el7.x86_64 #1 SMP Tue Aug 25 17:23:54 UTC 2020 x86_64 GNU/Linux
GCC gcc version 4.8.5 20150623 (Red Hat 4.8.5-44) (GCC)
Python Python 2.7.13 :: Continuum Analytics, Inc.
NextPolish nextPolish v1.4.0
Additional context (Optional) Add any other context about the problem here.