search

Nextomics / NextPolish2

Repeat-aware polishing genomes assembled using HiFi long reads
Other
63 stars 3 forks source link

yak for Illumina data? #1

Closed baozg closed 1 year ago

baozg commented 1 year ago

Hi, @moold

Is the yak take the HiFi kmer or Illumina kmer? In the code, it was from sr.R*.fq.gz, but the documentation didn't mention. So this could be from the short reads or HiFi reads?

moold commented 1 year ago

Illumina kmer

baozg commented 1 year ago

Thanks for your prompt response.

baozg commented 1 year ago

Could this work on the hifi-only?

moold commented 1 year ago

No