Polish using Oxford Nanopore assembly

Nextomics / NextPolish2

Repeat-aware polishing genomes assembled using HiFi long reads

Other

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Closed arslan9732 closed 4 months ago

arslan9732 commented 4 months ago

Hi, Can we use NextPolish2 to polish the assembly generated by Oxford nanopore reads? Or is it only applicable for HiFi reads?

Thanks

moold commented 4 months ago

Yes, ONT data can be used to assemble the genome, but polishing with NextPolish2 can only use HiFi data.