--rootGenomeLength doesn't work on phastSim 0.0.3

[trongnhanuit]

Dear authors, I've just found that the option "--rootGenomeLength" doesn't work on phastSim 0.0.3 while it still works well on version 0.0.2.

- Input files:

• tree.nwk ((((L01:1.25189e-05,(L06:0,L10:0):1.25189e-05):1.77407e-05,L04:3.02596e-05):1.95484e-06,(L03:2.40733e-05,L05:2.40733e-05):8.14108e-06):2.51284e-05,(L02:9.33487e-06,(L07:3.86732e-06,(L08:3.50865e-06,L09:3.50865e-06):3.58672e-07):5.46755e-06):4.8008e-05);
• MN908947.3.fasta

- Command:

phastSim --outpath . --seed 1 --treeFile tree.nwk --reference MN908947.3.fasta --outputFile output --rootGenomeLength 1000

- Error:

rootGenomeFrequencies = self.init_insertion_frequencies()
TypeError: init_insertion_frequencies() missing 1 required positional argument: 'ref'

Could you please help me to check it? Many thanks.

Cheers, Nhan

[trongnhanuit]

I can confirm that the option "--rootGenomeLength" works well on the new version of phastSim (0.0.4). I've just tested it.

Best regards, Nhan