search

Niema-Lab / ViralWasm-Epi

A client-side WebAssembly pipeline for viral molecular epidemiology
https://niema-lab.github.io/ViralWasm-Epi/
GNU General Public License v3.0
2 stars 0 forks source link

Add ability to visualize the tree directly from ViralWasm-Epi? #1

Open niemasd opened 1 year ago

niemasd commented 1 year ago

Hey, Daniel! I use a tool called Taxonium to visualize phylogenetic trees. It seems like Taxonium has a React component; would there be any way to use this to create a "Visualize Tree" button if the user performs phylogenetic inference, which visualizes the tree using Taxonium?

Note that this isn't urgent at all: users can already download the Newick tree from ViralWasm-Epi and then just open it in Taxonium. This would just be a nice convenient one-click solution to go from analysis results to visualization

niemasd commented 1 year ago

@theosanderson, the developer of Taxonium, has given us the green light to bug him if/when you try it out 😄 https://github.com/theosanderson/taxonium/issues/530#issuecomment-1721948293

daniel-ji commented 1 year ago

Hi Niema,

Sorry for just seeing this now - I forget to check the issues tab - I'll definitely take a look, thanks!

Best, Daniel