Open chengjianhong opened 5 years ago
This error is about the size of the spatial window versus coordinate window size minus the border. You're specifying border = 0
in your config file, try with larger values. The error will get logged in your log file so check that as well to see what the sizes are that are being specific complained about.
Hello: I use the 3DUnet model to do the Brain Tumor segmentation task ,and the training set is the MICCAI BraTS 2018 data. When I use the 'python3 net_run.py inference -c ./config/my_unet_config.ini -a niftynet.application.segmentation_application.SegmentationApplication' to inference the trained model with the config file which includes [TRAINING] , [INFERENCE],[NETWORK] and other config informations, it happens some errors:
I can't deal with the above problem and can't understand where my config is wrong? my config file and the generated files when inference are as follows, and look forward to your reply. config_and_log.zip