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NifTK / NiftyNet

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
http://niftynet.io
Apache License 2.0
1.36k stars 404 forks source link

Need to populate list of ideas for GSoC 2019 #307

Closed tvercaut closed 5 years ago

tvercaut commented 5 years ago

I create a stub wiki page that now needs to be populated: https://github.com/NifTK/NiftyNet/wiki/Google-Summer-of-Code-(GSoC)-2019-Ideas-List

Feel free to use this issue to jot down rough ideas. We can then consolidate these on the wiki.

tvercaut commented 5 years ago

Random topics:

wyli commented 5 years ago
YipengHu commented 5 years ago
tvercaut commented 5 years ago

@YipengHu: sounds great. This can be bundled with the video support. Would you be happy to act as a mentor if we get someone onboard? If so, would you mind writing a short project description for it on the wiki? Note the deadline for the full application (February 6, 2019 at 20:00 (GMT)).

tvercaut commented 5 years ago

@wyli If you are happy to act as a mentor in case we get a student, can you pick an idea you would be interested to mentor and write a short description for it on the wiki?

YipengHu commented 5 years ago

@YipengHu: sounds great. This can be bundled with the video support. Would you be happy to act as a mentor if we get someone onboard? If so, would you mind writing a short project description for it on the wiki? Note the deadline for the full application (February 6, 2019 at 20:00 (GMT)).

Definitely interested. I could not find any details for this though. Link to requirement for the project proposal?

wyli commented 5 years ago

@YipengHu: sounds great. This can be bundled with the video support. Would you be happy to act as a mentor if we get someone onboard? If so, would you mind writing a short project description for it on the wiki? Note the deadline for the full application (February 6, 2019 at 20:00 (GMT)).

Definitely interested. I could not find any details for this though. Link to requirement for the project proposal?

some guides here: https://google.github.io/gsocguides/mentor/defining-a-project-ideas-list

tvercaut commented 5 years ago

Brilliant. As far as I can see, there is no formal way for specific project proposals. You can look at a couple of examples coming from other organisation for last year's GSoC:

tvercaut commented 5 years ago

As discussed with @atbenmurray:

tvercaut commented 5 years ago

Would be nice to:

atbenmurray commented 5 years ago

First attempt at writing a 'sales pitch' for the proposed activity Making it easier to write new applications for the model zoo Niftynet is a powerful deep learning suite for the medical imaging field; we want to build on its success so far making it even easier to develop cutting-edge models and deploy them to the Model Zoo. Niftynet provides you with a suite of tools that help you develop networks based on TensorFlow and give you pre- and post-processing functionality to help you integrate your network with medical imaging data sources and databases. We intend to undergo a series of big improvements to the model building capability of Niftynet based on what we have learned from the model zoo thus far; our goal is to give model writers the means to create new applications with much less coding than before and to enable application writers to embed Niftynet networks into complex, interactive workflows.

atbenmurray commented 5 years ago

Also quite sales pitchy Integrating Niftynet into Slicer 3D Slicer is a powerful open source tool for medical imaging informatics, image processing and 3D visualisation. It has a plugin architecture that allows integration of applications into Slicer and Slicer into applications, and our goal is to integrate Niftynet into Slicer so that Slicer can be used as the front end of a deep learning platform. Where possible, we'll leverage existing tools (such as deepinfer) to do some of the heavy lifting, so that we can focus on bringing Slicer users the capability to seamlessly train and validate models and visualise results without having to leave Slicer.

tvercaut commented 5 years ago

Thanks @atbenmurray, this looks good. Don't forget to update the wiki page today or tomorrow (i.e. before the deadline).

atbenmurray commented 5 years ago

Will do this ev Ben

On Mon, 4 Feb 2019, 17:09 Tom Vercauteren <notifications@github.com wrote:

Thanks @atbenmurray https://github.com/atbenmurray, this looks good. Don't forget to update the wiki page today or tomorrow (i.e. before the deadline).

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/NifTK/NiftyNet/issues/307#issuecomment-460306318, or mute the thread https://github.com/notifications/unsubscribe-auth/AClN4YjoJztMi95mJ9jBxfUc_wpLx1xjks5vKFstgaJpZM4aD6ej .

atbenmurray commented 5 years ago

If you mean this link https://github.com/NifTK/NiftyNet/wiki/Google-Summer-of-Code-(GSoC)-2019-Ideas-List I don't appear to have edit permissions.

On Mon, 4 Feb 2019 at 18:08, Ben Murray ben.murray@gmail.com wrote:

Will do this ev Ben

On Mon, 4 Feb 2019, 17:09 Tom Vercauteren <notifications@github.com wrote:

Thanks @atbenmurray https://github.com/atbenmurray, this looks good. Don't forget to update the wiki page today or tomorrow (i.e. before the deadline).

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/NifTK/NiftyNet/issues/307#issuecomment-460306318, or mute the thread https://github.com/notifications/unsubscribe-auth/AClN4YjoJztMi95mJ9jBxfUc_wpLx1xjks5vKFstgaJpZM4aD6ej .

atbenmurray commented 5 years ago

I currently don't have permission to edit the wiki. I'm off this week; happy to edit the wiki this evening or tomorrow evening, but if that is too late, then can you just add them in with Medium, benjamin murray at kcl.ac.uk?

wyli commented 5 years ago

adding you to the admin team @atbenmurray

atbenmurray commented 5 years ago

Done! Hopefully is in right format and good.

tvercaut commented 5 years ago

Unfortunately, our application to GSoC was not successful. I am thus closing this issue.