search

Niinleslie / MesKit

A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
GNU General Public License v3.0
35 stars 9 forks source link

Suggestion for better visualizations of oncoplot #258

Open qingjian1991 opened 2 years ago

qingjian1991 commented 2 years ago

Hi:

In the function plotMutProfile, the colors of cells indicate the status of mutations for "SP" (Shared pattern: Public/Shared/Private), "CS" (Clonal status: Clonal/Subclonl) or "SPCS" status. However, users may want to show the alterations status of mutations (nonsynonymous, stopgain, stoploss et al.), which are available in the MAF files.

Therefore, could you add a parameter in the plotMutProfile to show the alterations status of mutations.

Example Figure is as below: image

Bests

likelet commented 2 years ago

@Niinleslie add this request to to do list