Hello, I have generated some figures in the past that showed the interaction terms in the figure and now they have been removed with only main terms being showing in the plot. How do I switch it back to generate these plots.
library(forestmodel)
library(survival)
library(dplyr)
pretty_lung <- lung %>%
dplyr::transmute(time,
status,
Age = age,
Sex = factor(sex, labels = c("Male", "Female")),
ECOG = factor(lung$ph.ecog),
`Meal Cal` = meal.cal)
print(forest_model(coxph(Surv(time, status) ~ ECOG * Age, pretty_lung)))
coxph(Surv(time, status) ~ ECOG * Age, pretty_lung
+ )
Call:
coxph(formula = Surv(time, status) ~ ECOG * Age, data = pretty_lung)
coef exp(coef) se(coef) z p
ECOG1 3.94301 51.57385 1.62842 2.421 0.01546
ECOG2 5.29316 198.97030 1.89672 2.791 0.00526
ECOG3 1.76105 5.81852 1.03344 1.704 0.08837
Age 0.05991 1.06174 0.02222 2.696 0.00702
ECOG1:Age -0.05718 0.94442 0.02540 -2.251 0.02439
ECOG2:Age -0.06954 0.93283 0.02907 -2.392 0.01677
ECOG3:Age NA NA 0.00000 NA NA
Likelihood ratio test=26.49 on 6 df, p=0.0001804
n= 227, number of events= 164
(1 observation deleted due to missingness)
Hello, I have generated some figures in the past that showed the interaction terms in the figure and now they have been removed with only main terms being showing in the plot. How do I switch it back to generate these plots.
But the output figure only shows
ECOG1 3.94301 51.57385 1.62842 2.421 0.01546 ECOG2 5.29316 198.97030 1.89672 2.791 0.00526 ECOG3 1.76105 5.81852 1.03344 1.704 0.08837 Age 0.05991 1.06174 0.02222 2.696 0.00702