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NineAbyss / GLBench

GLBench: A Comprehensive Benchmark for Graphs with Large Language Models
MIT License
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Issues about commands #1

Closed Jieerbobo closed 1 month ago

Jieerbobo commented 1 month ago

Thanks for your excellent work! However, I find that some of the code cannot be executed correctly using your commands. For example, when I run OFA using the following commands, it raises several issues.

cd models/enhancer/OneForAll/
bash run.sh
NineAbyss commented 1 month ago

Thanks for your excellent work! However, I find that some of the code cannot be executed correctly using your commands. For example, when I run OFA using the following commands, it raises several issues.

cd models/enhancer/OneForAll/
bash run.sh

Thank you for your interest in our work! Could you please provide more details about the issue? For example, specific error information would help us resolve it together.

Jieerbobo commented 1 month ago 
Traceback (most recent call last):
  File "/Users/jie/Documents/Experiment_3/GLBench-main/models/enhancer/OneForAll/run_cdm.py", line 32, in <module>
    from task_constructor import UnifiedTaskConstructor
  File "/Users/jie/Documents/Experiment_3/GLBench-main/models/enhancer/OneForAll/task_constructor.py", line 9, in <module>
    from data.chemmol.gen_data import MolOFADataset
  File "/Users/jie/Documents/Experiment_3/GLBench-main/models/enhancer/OneForAll/data/chemmol/gen_data.py", line 11, in <module>
    from data.chemmol.gen_raw_graph import smiles2graph
  File "/Users/jie/Documents/Experiment_3/GLBench-main/models/enhancer/OneForAll/data/chemmol/gen_raw_graph.py", line 11, in <module>
    file1 = open(os.path.join(os.path.dirname(__file__), "id2element.csv"), "r")
FileNotFoundError: [Errno 2] No such file or directory: '/Users/jie/Documents/Experiment_3/GLBench-main/models/enhancer/OneForAll/data/chemmol/id2element.csv'

Thanks for your reply!

Jieerbobo commented 1 month ago

It seems that the chemmol dataset is not used in your experiment. So how can I avoid some unrelated datasets when running OFA.

NineAbyss commented 1 month ago

It seems that the chemmol dataset is not used in your experiment. So how can I avoid some unrelated datasets when running OFA.

Sorry for the confusion. You can just delete the redundant import and the corresponding content in the code. We have updated the code. Thank you for your help!