RStudio doesn't build anymore

[turion]

See https://hydra.nixos.org/build/176099719. Log tail:

``` qtPreHook unpacking sources unpacking source archive /nix/store/78kqfbj786m0yxj3sh5j2br0969prpr4-source source root is source patching sources applying patch /nix/store/l04kvqr5gdlgh3imxpniq6r274c6q61w-r-location.patch patching file src/cpp/core/r_util/REnvironmentPosix.cpp applying patch /nix/store/a70nybb2ri1z3jv1c5i7x7g3383ji41z-clang-location.patch patching file src/cpp/core/libclang/LibClang.cpp applying patch /nix/store/vr4wcxlhlf2mz6dwl1cbchab14x5d0iv-system-node.patch patching file src/gwt/build.xml configuring Warning: unknown option '-d' * checking for file 'rsconnect/DESCRIPTION' ... OK * preparing 'rsconnect': * checking DESCRIPTION meta-information ... OK * excluding invalid files Subdirectory 'R' contains invalid file names: '.editorconfig' * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories Removed empty directory 'rsconnect/examples' Removed empty directory 'rsconnect/pkgdown' * building 'rsconnect_0.8.25.tar.gz' fixing cmake files... cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_SKIP_BUILD_RPATH=ON -DBUILD_TESTING=OFF -DCMAKE_INSTALL_LOCALEDIR=/nix/store/ig99wwkh7ka6msd7fdhyl67yx4lz5q1n-RStudio-1.4.1717/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/ig99wwkh7ka6msd7fdhyl67yx4lz5q1n-RStudio-1.4.1717/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/ig99wwkh7ka6msd7fdhyl67yx4lz5q1n-RStudio-1.4.1717/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/ig99wwkh7ka6msd7fdhyl67yx4lz5q1n-RStudio-1.4.1717/share/doc/RStudio -DCMAKE_INSTALL_INFODIR=/nix/store/ig99wwkh7ka6msd7fdhyl67yx4lz5q1n-RStudio-1.4.1717/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/ig99wwkh7ka6msd7fdhyl67yx4lz5q1n-RStudio-1.4.1717/share/man -DCMAKE_INSTALL_OLDINCLUDEDIR=/nix/store/ig99wwkh7ka6msd7fdhyl67yx4lz5q1n-RStudio-1.4.1717/include -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/ig99wwkh7ka6msd7fdhyl67yx4lz5q1n-RStudio-1.4.1717/include -DCMAKE_INSTALL_SBINDIR=/nix/store/ig99wwkh7ka6msd7fdhyl67yx4lz5q1n-RStudio-1.4.1717/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/ig99wwkh7ka6msd7fdhyl67yx4lz5q1n-RStudio-1.4.1717/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/ig99wwkh7ka6msd7fdhyl67yx4lz5q1n-RStudio-1.4.1717/lib -DCMAKE_POLICY_DEFAULT_CMP0025=NEW -DCMAKE_OSX_SYSROOT= -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_STRIP=/nix/store/bg35nfwn6zd616facdywiysgpprfvsji-gcc-wrapper-11.3.0/bin/strip -DCMAKE_RANLIB=/nix/store/rs684lgm8k7akkgbisb49z4vpxxc2zns-binutils-2.38/bin/ranlib -DCMAKE_AR=/nix/store/rs684lgm8k7akkgbisb49z4vpxxc2zns-binutils-2.38/bin/ar -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DCMAKE_INSTALL_PREFIX=/nix/store/ig99wwkh7ka6msd7fdhyl67yx4lz5q1n-RStudio-1.4.1717 -DRSTUDIO_TARGET=Desktop -DCMAKE_BUILD_TYPE=Release -DRSTUDIO_USE_SYSTEM_SOCI=ON -DRSTUDIO_USE_SYSTEM_BOOST=ON -DRSTUDIO_USE_SYSTEM_YAML_CPP=ON -DPANDOC_VERSION=2.17.1.1 -DCMAKE_INSTALL_PREFIX=/nix/store/ig99wwkh7ka6msd7fdhyl67yx4lz5q1n-RStudio-1.4.1717/lib/rstudio -DQT_QMAKE_EXECUTABLE=/nix/store/jvkkwa0sfyca1wpyvrgvpbsa34l0w60l-hook/bin/qmake -- The C compiler identification is GNU 11.3.0 -- The CXX compiler identification is GNU 11.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /nix/store/bg35nfwn6zd616facdywiysgpprfvsji-gcc-wrapper-11.3.0/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /nix/store/bg35nfwn6zd616facdywiysgpprfvsji-gcc-wrapper-11.3.0/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Machine architecture: x86_64 -- CMake build type: Release -- Using RStudio tools root: /opt/rstudio-tools/x86_64 -- Configured to build GWT -- Using ant: /nix/store/yl24cdsfxxm72m689kc1vsshb48lgc9z-ant-1.10.11/bin/ant -- Configured to install GWT -- Performing Test COMPILER_SUPPORTS_CXX11 -- Performing Test COMPILER_SUPPORTS_CXX11 - Success -- Found Boost: /nix/store/1w5fsr9m28585fsbbppc8cc69x8cpi4v-boost-1.77.0-dev/lib/cmake/Boost-1.77.0/BoostConfig.cmake (found suitable version "1.77.0", minimum required is "1.69.0") -- Found Boost: /nix/store/1w5fsr9m28585fsbbppc8cc69x8cpi4v-boost-1.77.0-dev/lib/cmake/Boost-1.77.0/BoostConfig.cmake (found suitable version "1.77.0", minimum required is "1.69.0") found components: atomic chrono date_time filesystem iostreams program_options random regex system thread -- No Crashpad libraries found under /opt/rstudio-tools/x86_64/crashpad/crashpad/out/Default/obj. Crashpad integration disabled. -- SOCI libraries found under /nix/store/287wpc41n1lxixfx8mrrfvq168qi58pq-soci-4.0.2/lib -- Found OpenSSL: /nix/store/hkb5vrx22dbnpryalcl41240f83llvss-openssl-1.1.1o/lib/libcrypto.so (found version "1.1.1o") -- Performing Test HAVE_SCANDIR_POSIX -- Performing Test HAVE_SCANDIR_POSIX - Success -- Looking for SA_NOCLDWAIT -- Looking for SA_NOCLDWAIT - found -- Looking for SO_PEERCRED -- Looking for SO_PEERCRED - found -- Looking for inotify_init1 -- Looking for inotify_init1 - found -- Looking for getpeereid -- Looking for getpeereid - not found -- Looking for setresuid -- Looking for setresuid - found -- Configured to build DESKTOP -- Found LibR: /nix/store/cs12xc2njghl2h3wnma9bmgv9pxpnqsa-R-4.1.3/lib/R -- Found R: /nix/store/cs12xc2njghl2h3wnma9bmgv9pxpnqsa-R-4.1.3/lib/R -- Found Qt: /nix/store/jvkkwa0sfyca1wpyvrgvpbsa34l0w60l-hook/bin/qmake -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_BINDIR CMAKE_INSTALL_DOCDIR CMAKE_INSTALL_INCLUDEDIR CMAKE_INSTALL_INFODIR CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LIBEXECDIR CMAKE_INSTALL_LOCALEDIR CMAKE_INSTALL_MANDIR CMAKE_INSTALL_OLDINCLUDEDIR CMAKE_INSTALL_SBINDIR CMAKE_POLICY_DEFAULT_CMP0025 -- Build files have been written to: /build/source/build cmake: enabled parallel building building build flags: -j2 -l2 SHELL=/nix/store/07ln9bxp9k8nds669r24fsywf4d1jlly-bash-5.1-p16/bin/bash Buildfile: /build/source/src/gwt/build.xml ext: [jscomp] Compiling 62 file(s) with 93 extern(s) [jscomp] 0 error(s), 0 warning(s) javac: [mkdir] Created dir: /build/source/src/gwt/bin [javac] Compiling 3 source files to /build/source/src/gwt/bin [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Compiling 2446 source files to /build/source/src/gwt/bin [copy] Copying 1594 files to /build/source/src/gwt/bin gwtc: panmirror: [mkdir] Created dir: /build/source/src/gwt/www/js/panmirror [exec] node:internal/modules/cjs/loader:936 [exec] throw err; [exec] ^ [exec] [exec] Error: Cannot find module 'fuse-box/sparky' [exec] Require stack: [exec] - /build/source/src/gwt/panmirror/src/editor/fuse.js [exec] at Function.Module._resolveFilename (node:internal/modules/cjs/loader:933:15) [exec] at Function.Module._load (node:internal/modules/cjs/loader:778:27) [exec] at Module.require (node:internal/modules/cjs/loader:1005:19) [exec] at require (node:internal/modules/cjs/helpers:102:18) [exec] at Object. (/build/source/src/gwt/panmirror/src/editor/fuse.js:16:27) [exec] at Module._compile (node:internal/modules/cjs/loader:1105:14) [exec] at Object.Module._extensions..js (node:internal/modules/cjs/loader:1159:10) [exec] at Module.load (node:internal/modules/cjs/loader:981:32) [exec] at Function.Module._load (node:internal/modules/cjs/loader:822:12) [exec] at Function.executeUserEntryPoint [as runMain] (node:internal/modules/run_main:77:12) { [exec] code: 'MODULE_NOT_FOUND', [exec] requireStack: [ '/build/source/src/gwt/panmirror/src/editor/fuse.js' ] [exec] } [exec] Result: 1 [java] Compiling module org.rstudio.studio.RStudio ```

I'm currently bisecting on x86_64-linux.

Notify maintainers

@ciil @cfhammill

[turion]

Bisecting is very hard because there are a lot of commits where even some dependencies don't build. I'm trying https://github.com/timokau/nix-bisect, but it has bugs.

[damhiya]

It seems mongodb has similar problem. [https://github.com/NixOS/nixpkgs/issues/171928]()

[MrTarantoga]

I have investigated the same problem during the change the branch from 21.11 to 22.05.

I assume the error is related to the new compiler version (gcc 11 and later) will not compile the rstudio version. I've tried myself to fix this error, but the R version that is linked to rstudio is also too new, this will have some errors during changed headers of the new R version.

The only solution would be to raise to the current rstudio version. I have prepared the update here. But currently I am not able to start rstudio correctly:

TTY detected. Printing informational message about logging configuration. Logging configuration loaded from '/etc/xdg:/home/goetz/.nix-profile/etc/xdg:/etc/profiles/per-user/goetz/etc/xdg:/nix/var/nix/profiles/default/etc/xdg:/run/current-system/sw/etc/xdg:/nix/store/15fs19rshpzj57hw130n76w0fqhmxpsm-gnome-settings-daemon-42.2/etc/xdg/rstudio/logging.conf'. Logging to '/home/goetz/.local/share/rstudio/log/rdesktop.log'. Warning: Ignoring XDG_SESSION_TYPE=wayland on Gnome. Use QT_QPA_PLATFORM=wayland to run on Wayland anyway. 2022-06-08T12:12:40.894937Z [rdesktop] ERROR system error 2 (No such file or directory) [path: /nix/store/s1jjw29757y4ilsrkb0n1ylayfl9m52x-RStudio-2022.02.3+492/lib/rstudio/bin/resources/stylesheets/rstudio-gnome-light.qss]; OCCURRED AT rstudio::core::Error rstudio::core::FilePath::openForRead(std::shared_ptr<std::basic_istream >&) const src/cpp/shared_core/FilePath.cpp:1461; LOGGED FROM: void rstudio::desktop::applyDesktopTheme(QWidget*, bool) src/cpp/desktop/DesktopUtils.cpp:176 2022-06-08T12:12:41.358884Z [rdesktop] ERROR system error 2 (No such file or directory) [path: /nix/store/s1jjw29757y4ilsrkb0n1ylayfl9m52x-RStudio-2022.02.3+492/lib/rstudio/bin/resources/html/error.html]; OCCURRED AT rstudio::core::Error rstudio::core::FilePath::openForRead(std::shared_ptr<std::basic_istream >&) const src/cpp/shared_core/FilePath.cpp:1461; LOGGED FROM: void rstudio::desktop::SessionLauncher::showLaunchErrorPage() src/cpp/desktop/DesktopSessionLauncher.cpp:379 2022-06-08T12:12:41.359539Z [rdesktop] ERROR system error 2 (No such file or directory) [path: /nix/store/s1jjw29757y4ilsrkb0n1ylayfl9m52x-RStudio-2022.02.3+492/lib/rstudio/bin/resources/html/loading.html]; OCCURRED AT rstudio::core::Error rstudio::core::FilePath::openForRead(std::shared_ptr<std::basic_istream >&) const src/cpp/shared_core/FilePath.cpp:1461; LOGGED FROM: void rstudio::desktop::MainWindow::onLoadFinished(bool) src/cpp/desktop/DesktopMainWindow.cpp:714 "Uncaught TypeError: Cannot read property 'notifyRCrashed' of undefined" 2022-06-08T12:12:41.364791Z [rdesktop] ERROR system error 2 (No such file or directory) [path: /nix/store/s1jjw29757y4ilsrkb0n1ylayfl9m52x-RStudio-2022.02.3+492/lib/rstudio/bin/resources/html/loading.html]; OCCURRED AT rstudio::core::Error rstudio::core::FilePath::openForRead(std::shared_ptr<std::basic_istream >&) const src/cpp/shared_core/FilePath.cpp:1461; LOGGED FROM: void rstudio::desktop::MainWindow::onLoadFinished(bool) src/cpp/desktop/DesktopMainWindow.cpp:714 2022-06-08T12:12:41.574135Z [rdesktop] ERROR system error 2 (No such file or directory) [path: /nix/store/s1jjw29757y4ilsrkb0n1ylayfl9m52x-RStudio-2022.02.3+492/lib/rstudio/bin/resources/html/loading.html]; OCCURRED AT rstudio::core::Error rstudio::core::FilePath::openForRead(std::shared_ptr<std::basic_istream >&) const src/cpp/shared_core/FilePath.cpp:1461; LOGGED FROM: void rstudio::desktop::MainWindow::onLoadFinished(bool) src/cpp/desktop/DesktopMainWindow.cpp:714

Maybe the maintainer can help me?

[turion]

Unfortunately I don't understand this error at all. Do you maybe have some old settings files around? Possibly, can you move away all RStudio settings in your home directory and try again?

[turion]

Either way, feel free to open a pull request with your change, and we can discuss there.

[MrTarantoga]

Unfortunately I don't understand this error at all. Do you maybe have some old settings files around? Possibly, can you move away all RStudio settings in your home directory and try again?

I solved the error already. It was not related to rstudio, more my fault. I struggled with the working of nix.

[MrTarantoga]

Either way, feel free to open a pull request with your change, and we can discuss there.

I created already a pull request. But I'm not sure if I have understand the way of backporting the changes correctly. As I understand, it is mandatory to create a pull request for master and create another one for backporting the changes to the current release.

[turion]

Ah, I think you mean this here: https://github.com/NixOS/nixpkgs/pull/177021 (Your link goes somewhere else) Great! Let's continue there.

[alarsyo]

This can be closed I think!