Package request: amrfinder

NixOS / nixpkgs

Nix Packages collection & NixOS

MIT License

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Package request: amrfinder #299221

Open Pandapip1 opened 3 months ago

Pandapip1 commented 3 months ago

Project description

A tool that identifies AMR genes, resistance-associated point mutations, and select other classes of genes using protein annotations and/or assembled nucleotide sequences.

Metadata

homepage URL: https://www.ncbi.nlm.nih.gov/pathogens/antimicrobial-resistance/AMRFinder/
source URL: https://github.com/ncbi/amr
license: https://github.com/spdx/license-list-XML/issues/2419
platforms: unix, linux, darwin

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wizardwatch commented 3 months ago

I have a very basic version of this done, just a flake/package that does the bare minimum to let it pass the tests. It will likely be a couple of months before I can contribute it here or upstream, but I can say that this work is pretty easy if someone else would like to do it before then.

Pandapip1 commented 3 months ago

I have a very basic version of this done, just a flake/package that does the bare minimum to let it pass the tests. It will likely be a couple of months before I can contribute it here or upstream, but I can say that this work is pretty easy if someone else would like to do it before then.

Can you put the flake / package file in a gist?

wizardwatch commented 3 months ago

I can check if I can do so immediately, but it is related to an active research project at UGA, so I will have to get approval. If I can, I will post it. Fortunately, the paper will be published soon, and I retain full ownership of the code, so I will make a gist at that point.