Over-There-Is
commented
11 months ago cov-lineages/pango-designation#2061 sars-cov-2-variants/lineage-proposals#360
Open NkRMnZr opened 1 year ago
Over-There-Is
commented
11 months ago cov-lineages/pango-designation#2061 sars-cov-2-variants/lineage-proposals#360
XBB.1.5 lineage tracker
"FLippeR Combo"
G11266T, A22996C, Oct13]England/CLIMB-CM7Y8FBE/2023|EPI_ISL_18385764|2023-09-26G22927T, T27794A, C28312T, Oct17]USA/TX-TAMGHRC-UTHL_56783/2023|EPI_ISL_18399731|2023-09-05T3565C, T22926G, T22928C, 11/10]Spain/GA-SCQ-269623/2023|EPI_ISL_18492256|2023-10-09G1928A, C7840T, C22995G, 2, Dec18]C21411A, A22994C, Nov29]USA/CA-LACPHL-AY03562/2023|EPI_ISL_18559245|2023-10-31A12788G, C22995G, C26735T, Sep27]USA/CA-CDPH-FS47040411/2023|EPI_ISL_18317411|2023-09-01G4285A, C6675T, C22995G, Oct23]USA/TX-HMH-134439/2023|EPI_ISL_18424243|2023-09-26C6401T, T20733C, C22995G, 2 seqs, 11/30]T4630C, C22995G, G28378A, Oct24]USA/MN-CDC-VSX-A06305/2023|EPI_ISL_18430422|2023-10-06C12754T, C15755G, A22996C, 11/02]Spain/MC-HCUVA-20043419/2023|EPI_ISL_18458107|2023-09-19G3880A, A10042G, C22995G, Nov22]England/CLIMB-CM7YRD1K/2023|EPI_ISL_18530478|2023-11-08L455X
G6337T, T17124C, G22927T, -T8737C, Oct19]Brazil/MG-FIOCRUZ-IRR393/2023|EPI_ISL_18408395|2023-09-19C6738T, T14145C, G22927T, Sep18]Canada/ON-PHL-23-30249/2023|EPI_ISL_18277495|2023-09-06C6195T, G22927T, A23899G, 2, Oct10]T17124C, T22926G, T22928C, T28297C, 10/17]Spain/GA-SCQ_265791/2023|EPI_ISL_18400581|2023-10-02C3156T, G22927T, G25337T, Oct7]Colombia/VAC-INS-VG-30739/2023|EPI_ISL_18361016|2023-07-11C7834T, A11126G, G22927T, 12/01]Peru/LIM-INS-47140/2023|EPI_ISL_18572591|2023-10-31G5062A, T6106C, G22927T, Nov21]Peru/LIM-INS-47024/2023|EPI_ISL_18529873|2023-10-18G3320T, C13197T, G22927T, 2 seqs, Dec1]F456L
C5817T, C20178T, T22928C, 4, Sep27]T3520A, G21770T, T22928C, 13, Sep29]C5339T, C18681T, T22930G, 4, Sep02]C8386T, A10420G, T22928C, 16, Sep27]T7771C, G17196A, T22928C, 3, Oct17]C2040T, T16548C, T22928C, 38, Sep22]G1820A, C11020T, T22928C, 5, Sep27]C857A, T22928C, T25628C, 14, Sep29]C6539T, A19696G, T22930A, 6, Sep27]T13983C, T22928C, 27, Sep28]A2725G, T3160A, C3318T, 5, Oct13]T478X
C12439T, C13426T, C22995G, 5, Sep20]C12651T, A22681T, C22995G, 35, Sep28]G22111T, C22995G, T24583C, 26, Sep27]C29614T, A12210G, C22995G, 12, Sep22]T6435C, A18360G, C22995G, 5, Sep5]C9679T, C10450T, C22995G, 4, Sep18]T9205C, G22021T, C22995G, 2, Sep29]C14120T, C22995G, C29541T, 49, Oct18]A18172G, C22995G, T26301C, 70, Sep29]T9412C, A22052C, C22995G, 3, Sep19]G21668A, C22995G, T28693C, 7 seqs, Sep15]T7282C, T11227C, C22995G, 3, Sep29]A10323G, C22993T, C22995G, 16, Sep22]C3924T, C22993A, C22995G, 3, Sep27]C8982A, T10204C, C22995G, 11, Sep20]C3267T, C22995G, C28732T, 32, Sep27]A3946C, A11456G, C22995G, 2, Aug25]T17124C, T10204C, C22995G, T23602C, 51, Sep22], see branch 1 of sars-cov-2-variants/lineage-proposals#323 [Query:T10204C,C27005T, C22995G,-T18732C, 13, Sep16]C6449T, C11518T, C22995G, 18, Sep27]C22995G, C24210T, G25507A, 19, Sep27]C9532T, A21132G, C22995T, 3, Sep18]C9996T, C15588T, C22995G, 8, Oct09]C12924T, C22995G, T23018C, -T17124C, -T28297C, 20, Sep15]G27915T, C2710T, C22995G, -A1230C, -T7033C, -G5917A, -T28297C, 30, Sep29]C19374T, C22995G, A27636G, 5, Oct23]A19239G, C22995G, G27112A, 10, Sep28]C4276T, C4832T, C22995G, 9, Oct2]C6539T, A22005C, C22995G, 4, Sep27]C7039T, G8137A, C22995G, 6, Aug30]G7561A, A12666C, C22995G, 15, Oct9]C22995T, G23222A, C28905T, 4, Sep29]G16377A, C22995G, T24100G, 4, Sep23]G1957T, G16912A, C22995G, Nov9]Ukraine/81217/2023|EPI_ISL_18486408|2023-09-11Q613H
C3924T, G23401C, C24912G, 66, Sep29]C2037T, C8123T, G23401T, 6, Aug21]G1466A, C22450T, G23401T, 7, Aug24]RBD Levels
G2059A, C4686T, A23040T, 22, Sep16]A11206G,T22917A, C7086T, 16 seqs, Sep16]C19572T, A22893C, A23223T, 3, Aug21]T23042C, G25677T, C11606T19, Sep6]G2144T, A16482G, A23040T, 59, Sep25]A5068G, G5761A, C21588T, 2, Sep20]A1765G, C6593T, A22629C, 2, Aug30] following C11124T(ORF1a:A3620V), A13833G, A22920T(S:Y453F), G23311C(S:E583D), C29119TC6982T, G9623A, T23042C, 33, Sep22]T23042C, C18646T, G15957T, 16, Sep18]T6949C, T9850C, G22599T, 13, Sep13]T5056G, T22912G, 13, Sep21]G9802A, A22359T, A22629C, 6, Sep22]C19374T, C22211T, A22629C, 8, Sep11]T9697C, T21465C, A22629C, 3, Aug22]Known Potential Growth Booster
A5116G, C12651T, C23280T, 92, Sep27]T15597C, C24134A, 22, Sep27]T8338C, G21578A, C24210T, 11, Aug24]C5849T, C12525T, C24210T, 23, Sep27]C7609T, G14131A, G23222A, 54, Sep27]A13986G, T16548A, C24210T, 13, Sep27]C11962T, T20955C, C24210T, 4, Sep15]C3924T, C7072T, C23123T, 84, Sep29]A23223T, G27637A, G29690T, 6, Sep10]C4891T, T10192C, A22474T, 14, Sep28]C23423T, T24976C, C28432T, 26, Sep26]T20850C, G22604A, C25728T, 62, Aug21]T10204C, C8733T, C24210T, 390, Sep27]C14178T, T22510C, G23222A, 15, Sep29] with furtherS:F456Lsub-branchFCS & Flanking
G23587T, G26929A, C10277A, 31, Aug23]Others
C5170T,C22530T,T17124C,A10042G, 28, Sep4]C1150T, A23329T, A24551G, 39, Aug31]T10429A, T23443C, C23802T, 27, Sep19]T20080G, G21800T, G24328C, 6, Sep28]C25413T, T4768C, A23786G, 99, Sep18]A24696G, C25836T, A28768G, 46, Sep29]C8344T, A24900T, T25674C, 78, Sep28]C22530G, C28419T, 131, Sep15]T10204C, G23417A, C27306T, 35, Sep27]A5350G, C8982T, G22049T, 108, Sep26]T19158C, A22107G, C23802T, 44, Sep27]C15720T, A24905G, A24922G, 31, Aug28]C7732T, C15842T, G22100A, G22104T, 13, Sep19]C7564T, G12467T, A22814G, 13, Nov9]G10678A, A13953G, G25563C, 129, Sep28]C7124T, C13515T, A21137G, T22928C, 15, Sep28]C6286T, C7834T, A22524T, 21, Sep28]Designated
XBB.1.5.70>G2891T(ORF1a:A876S), C12469T, then GK.3.1 followsGK.3>C22986T(S:A475V) [Query:C12469T, C22986T]XBB.1.5 [T17124C > T23018C]>C14877T>G27762C(ORF7b:E3Q) [Query:T17124C, T23018C, C14877T, G27762C]Losing Momentum
A13419T, G22104T, C22530T, 17, Sep14]G21668A, C25292T, 61 seqs, Sep27]T17124C,C28519T,C22995G, 11, Sep18]A5268G, C23111A, C24210T, T10204C, 100, Sep25]C1555T, C6402T, T22930A, 59, Sep29]C22995G, C22329T, A3309G, 86, Sep26]A24383T, G24770T, 88, Sep18]Inactive
C952T, T9352C, T22930A, 32, Sep03]G17079A, T22930G, A27675C, 31, Aug25]C6268T, A21366T, G23309C, 23, Aug11]G10157T, C18555T, G22599T, 21, Aug18]G23390A, G23401T, C24210T, 2, Aug03]A11782G, C11824T, G25064C, 58, Aug18]T10204C, G23401T, G24416A, 25 seqs, 08/05]