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NoamShental / 5R

SMURF reconstruction of sequencing results based on the 5R protocol
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Unable to read file '5R-master/GG_5R/GreenGenes_201305_unique_up_to_3_ambiguous_16S.mat'. No such file or directory. #7

Open EmmaHalo opened 3 years ago

EmmaHalo commented 3 years ago

Hi Noam,

I was using the lastest Scripts，but failed.

Command: sh 5R-master/5R_linux/run_main_5R.sh PATH_TO_RUNTIME ./example_fastq ./GG_5R GreenGenes_201305 ./example_results/5R_SMURF_example.txt 126 1

error: Unable to read file '5R-master/GG_5R/GreenGenes_201305_unique_up_to_3_ambiguous_16S.mat'. No such file or directory.

I can only find the following files under the 5R-master/GG_5R: GreenGenes_201305_unique_up_to_3_ambiguous_16S_ffpe5regions_2mm_RL160_region1.mat GreenGenes_201305_unique_up_to_3_ambiguous_16S_ffpe5regions_2mm_RL160_region2.mat GreenGenes_201305_unique_up_to_3_ambiguous_16S_ffpe5regions_2mm_RL160_region3.mat GreenGenes_201305_unique_up_to_3_ambiguous_16S_ffpe5regions_2mm_RL160_region4.mat GreenGenes_201305_unique_up_to_3_ambiguous_16S_ffpe5regions_2mm_RL160_region5.mat GreenGenes_201305_unique_up_to_3_ambiguous_16S_headers.mat taxonomy_db.mat

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Thanks!

wangyzh57 commented 1 year ago

Hi EmmaHalo, I meet the same situation as you and can not "load(uniS16_file,'Header_uni','Sequence_uni')" After reviewing the code I found it seems no such file or directory named '5R-master/GG_5R/GreenGenes_201305_unique_up_to_3_ambiguous_16S.mat' in GG_5R folder Did you resolve the problem? Thanks!