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Noble-Lab / casanovo

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
https://casanovo.readthedocs.io
Apache License 2.0
116 stars 40 forks source link

Remove `train_from_scratch` config option #275

Closed bittremieux closed 10 months ago

bittremieux commented 11 months ago

Instead of having to specify train_from_scratch in the config file, training will proceed from an existing model weights file if this is given as an argument to casanovo train.

Fixes #263.

codecov[bot] commented 11 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (3c2d3f5) 89.54% compared to head (2030052) 89.74%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #275 +/- ## ========================================== + Coverage 89.54% 89.74% +0.20% ========================================== Files 12 12 Lines 918 917 -1 ========================================== + Hits 822 823 +1 + Misses 96 94 -2 ```

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