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Noble-Lab / casanovo

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
https://casanovo.readthedocs.io
Apache License 2.0
102 stars 37 forks source link

Casanovo v4.1.0: RuntimeError about NVIDIA driver even CPU mode #302

Closed progistar closed 7 months ago

progistar commented 7 months ago

RuntimeError: The NVIDIA driver on your system is too old (found version 11080). Please update your GPU driver by downloading and installing a new version from the URL: http://www.nvidia.com/Download/index.aspx Alternatively, go to: https://pytorch.org to install a PyTorch version that has been compiled with your version of the CUDA driver.

I used CPU mode, but the RuntimeError was occurred. I think it is not serious issue; however, it would be great to fix it.

Thank you for your effort in advance!

bittremieux commented 7 months ago

This error originates from PyTorch/PyTorch Lightning and because our code doesn't trigger it, but rather underlying PyTorch, unfortunately we can't avoid it.

As a workaround, you can "hide" the GPU when running Casanovo by setting CUDA_VISIBLE_DEVICES to an empty value. E.g.:

CUDA_VISIBLE_DEVICES="" casanovo ...

With ... the Casanovo command you want to execute.

I think that this should work.

progistar commented 7 months ago

@bittremieux Thank you for your quick reply! It really helps me!