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Noble-Lab / casanovo

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
https://casanovo.readthedocs.io
Apache License 2.0
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Use Fourier embeddings #345

Open wsnoble opened 1 week ago

wsnoble commented 1 week ago

This paper suggests that a Fourier embedding rather than sinusoidal embeddings works better, at least for metabolomics data. See p. 34 and Extended Data Figure 4.