Release of v0.2 - Githubissues

NorwegianVeterinaryInstitute / Bifrost

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Release of v0.2 #4

Closed karinlag closed 6 years ago

karinlag commented 6 years ago

Main changes:

general cleanup of entire pipeline
included multiqc in qc-track
included bbduk, bwamem, pilon and prokka in assembly pipeline
can now run only amr/virulence/mlst via options in config file
can use conda environments