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NorwegianVeterinaryInstitute / DemultiplexRawSequenceData

A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
GNU General Public License v3.0
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Naming convention for projects and samples in MiSeq #3

Closed arvindsundaram closed 1 year ago

arvindsundaram commented 4 years ago

Deadline: Week 11

arvindsundaram commented 4 years ago

Refer here: https://github.com/NorwegianVeterinaryInstitute/prod_bioinf/blob/master/SOP.md

karinlag commented 4 years ago

I think we have a main switch between what goes to saga and what should in the long run go to the production server. Last meeting we introduced the word Standard for things that should be analyzed by our coming standard pipelines.

I thus suggest prefixing all projects with either R, for research, and S for standard, this will allow us to automagically transfer the data where it should go. After that, we can on those with an S gradually add standard pipelines based on the stuff that comes after the S as a switch.