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NorwegianVeterinaryInstitute / DemultiplexRawSequenceData

A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
GNU General Public License v3.0
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feature request: Ensure that /usr/bin/java exists before starting execution #31

Closed georgemarselis-nvi closed 1 year ago

georgemarselis-nvi commented 1 year ago

notify before running script if not.

georgemarselis-nvi commented 1 year ago

from the FastQC README.txt

Having said that we've only tested in on Windows, MacOSX and Linux running the Oracle v1.6 to 1.8 JREs.

image

openjdk 17.0.5 2022-10-18 OpenJDK Runtime Environment (Red_Hat-17.0.5.0.8-1.fc37) (build 17.0.5+8)

and in seqtech00

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openjdk 11.0.18 2023-01-17 LTS OpenJDK Runtime Environment (Red_Hat-11.0.18.0.10-2.el9_1) (build 11.0.18+10-LTS) OpenJDK 64-Bit Server VM (Red_Hat-11.0.18.0.10-2.el9_1) (build 11.0.18+10-LTS, mixed mode, sharing)

i think this issue is done and nailed down.