feature request: Ansible script that installs FastQC and changes the "processes" variable in the startup script from 4 to nCPUs

[georgemarselis-nvi]

so FastQC is a java program mainly, but it includes a start-up perl script.

Look at /usr/local/bin/fastqc for source

That script initializes the memory, threads and CPUs used for the program.

We should customize it to utilize all the available CPUs to speed up demultiplexing

[karinlag]

FastQC is quite fast already, so I suspect that the time gained to do this might not be cost effective.