discussion: what does demultiplexing do, if a project duplicate is found?

[karinlag]

Which project are you thinking of now?

I think this ties into https://github.com/NorwegianVeterinaryInstitute/ClarityLims/issues/10 . If we get that one settled, I think things would be much clearer (cough).

[georgemarselis-nvi]

none in particular. but, the idea popped into my head cuz there was too much sun outside: the lab will say "this will never happen", probably, but what if? what do we do then?

it doesn't quite map with #10 but close enough

Best Regards,

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George Marselis

Linux Engineer

HPC and Bioinformatics @NVI

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From: Karin Lagesen @.***> Sent: Sunday, May 7, 2023 9:37:58 PM To: NorwegianVeterinaryInstitute/DemultiplexRawSequenceData Cc: Marselis, George; Assign Subject: Re: [NorwegianVeterinaryInstitute/DemultiplexRawSequenceData] discussion: what does demultiplexing do, if a project duplicate is found? (Issue #63)

Which project are you thinking of now?

I think this ties into NorwegianVeterinaryInstitute/ClarityLims#10https://github.com/NorwegianVeterinaryInstitute/ClarityLims/issues/10 . If we get that one settled, I think things would be much clearer (cough).

— Reply to this email directly, view it on GitHubhttps://github.com/NorwegianVeterinaryInstitute/DemultiplexRawSequenceData/issues/63#issuecomment-1537524477, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ASS7CRBF2S2EHYI4P5EHVRTXE72ZNANCNFSM6AAAAAAXZAJCYM. You are receiving this because you were assigned.Message ID: @.***>

[magnulei]

There are two "projects" in the lims. Three if you include the VIGAS flavour:

1. Project = Project Submission
2. Project Account = The project number in instipro. Must be added to a list by an administrator.
3. Species = VIGAS Project name

If I am not mistaken, this is how it works:

• Project (aka submission) is not used by the demultiplexing script at all. This is just for lab users to have an overview of the different submissions in the lims.

• Project Account is the same as "Sample_Project" in the sample sheet. This will indeed be in duplicate as it is reused for any sample registered to be invoiced from that particular project account.

• Species is species and is used to send the sample to the correct bucket in VIGAS.

So in conclusion: this is not an issue for the demultiplexing script. Project (aka submission) could in theory be created in duplicate by mistake, but this info wont be used for demultiplexing anyway.