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NorwegianVeterinaryInstitute / DemultiplexRawSequenceData

A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
GNU General Public License v3.0
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Instructions for NIRD transfer #72

Closed magnulei closed 9 months ago

magnulei commented 9 months ago

Before, this repo had instructions on how to transfer files to NIRD. I am rarely doing this task, so every time Im doing it, Im using some time to remember how to do it. Usually I find the old .md file in the repo history, but this one is not really up to date.

After doing this today, I wrote instructions for myself: https://github.com/magnulei/md_vetinst/blob/main/transfer_to_NIRD.md

I am getting at two points here:

  1. Is the way I am doing it ok?
  2. Should we continue to host transfer-to-NIRD instructions on this repo until the automatic solution is in place?

For reference, this was the old instruction: https://github.com/NorwegianVeterinaryInstitute/DemultiplexRawSequenceData/blob/73667468bc0d3c3e9cabbfe0c8502fdbde2be449/transfer_to_NIRD.md?plain=1

CathrineAB commented 9 months ago

That's the way I do it. But I have to login to nird.login-lmd.sigma2.no to get access via WinSCP.

Some small typos. but approved by me. :-)

magnulei commented 9 months ago

Thanks. Fixed. Dont know if you want the instructions inside the repo or not, George? Will hopefully be obsolete soon anyways...

georgemarselis-nvi commented 9 months ago

Dont know if you want the instructions inside the repo or not, George?

For historical reasons and for some of us uncaffeinated in the morning, can I please ask you to put the instructions in the repo?

Will hopefully be obsolete soon anyways...

That's the plan!

magnulei commented 9 months ago

Done.

https://github.com/NorwegianVeterinaryInstitute/DemultiplexRawSequenceData/blob/master/transfer_to_NIRD.md