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NorwegianVeterinaryInstitute / DemultiplexRawSequenceData

A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
GNU General Public License v3.0
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new feature: FIle names missing a "." after the Sequencer ID #74

Open ajkarloss opened 1 year ago

ajkarloss commented 1 year ago

Current sequence file name: 23XXX_M065782023-XX-XXX-XXX_S1_R1_001.fastq.gz

Correct sequence file name: 23XXX_M06578.2023-XX-XXX-XXX_S1_R1_001.fastq.gz

georgemarselis-nvi commented 1 year ago

23XXX_M065782023-XX-XXX-XXX_S1_R1_001.fastq.gz

hold on a sec, here.

23XXX_M065782023-XX-XXX-XXX_S1_R1_001.fastq.gz is the way the compressed files come out of bcl2fastq.

remind me, why do we have to rename them, again?