NorwegianVeterinaryInstitute / Talos

A shotgun metagenomic analysis pipeline using nextflow
BSD 3-Clause "New" or "Revised" License
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Check how R-packages can be installed using yaml #32

Open Thomieh73 opened 4 years ago

Thomieh73 commented 4 years ago

The processes for hulk and average genome sizes, need R packages. When I set up the environments the packages (ggplot and reshape) are not installed, except for base-R. Because of this the jobs crash because the packages are not installed.

I can install them in the conda environment by running the .command.run file of one of the crashed jobs.

after that the process will just work fine. That is a bug that needs to be fixed.