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NorwegianVeterinaryInstitute / Talos

A shotgun metagenomic analysis pipeline using nextflow
BSD 3-Clause "New" or "Revised" License
1 stars 2 forks source link

Add report creation #41

Closed Thomieh73 closed 3 years ago

Thomieh73 commented 3 years ago

Arvind had a snippet that showed how to create a report after the nextflow script was done

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params {
    reportdir = "$baseDir/90_reports/"
}

report {
    enabled = true
    file = "$params.reportdir/nextflow_report.html"
}

timeline {
    enabled = true
    file = "$params.reportdir/nextflow_timeline.html"
}

dag {
    enabled = true
    file = "$params.reportdir/nextflow_flowchart.html"
}

*******************************************
Thomieh73 commented 3 years ago

This has been added to the bash script that runs the pipeline,