I get the following error message when running the 02_simple_run.nf track, when it comes to the plot_avgsizes process. However, the plot_coverage process works fine, so it seems to be a specific R related issue perhaps?
Command output:
reshape ggplot2
FALSE FALSE
Command error:
Warning: unable to access index for repository https://cran.uib.no/src/contrib:
cannot open URL 'https://cran.uib.no/src/contrib/PACKAGES'
Loading required package: reshape
Loading required package: ggplot2
Warning messages:
1: packages ‘reshape’, ‘ggplot2’ are not available (for R version 3.6.1)
2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘reshape’
3: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘ggplot2’
Error in melt(avg_data, id = c("samples")) :
could not find function "melt"
Execution halted
From the .command.log file:
Warning: unable to access index for repository https://cran.uib.no/src/contrib:
cannot open URL 'https://cran.uib.no/src/contrib/PACKAGES'
Loading required package: reshape
Loading required package: ggplot2
reshape ggplot2
FALSE FALSE
Warning messages:
1: packages ‘reshape’, ‘ggplot2’ are not available (for R version 3.6.1)
2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘reshape’
3: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘ggplot2’
Error in melt(avg_data, id = c("samples")) :
could not find function "melt"
Execution halted
Hi Håkon,
So from the error message it seems it does not want to install the R-packages which is odd. And it is running R version 3.6.1, which is old as well.... Hmmm I have to check what is happening here.
I get the following error message when running the
02_simple_run.nf
track, when it comes to the plot_avgsizes process. However, the plot_coverage process works fine, so it seems to be a specific R related issue perhaps?From the
.command.log
file: