Check if HULK is more appropriate to use than MASH for metagenomes

NorwegianVeterinaryInstitute / Talos

A shotgun metagenomic analysis pipeline using nextflow

BSD 3-Clause "New" or "Revised" License

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Closed Thomieh73 closed 4 years ago

Thomieh73 commented 4 years ago

HULK is a program that uses a different kmer based method to calculate distances between metagenomes: See this link for more: https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-019-0653-2

Thomieh73 commented 4 years ago

I replaced mash with hulk to calculate distances between metagenomes. It made more sense to me.