zelenkastiot
commented
3 years ago Jupyter books in development (05-Feb-2021)
1: "Whole-brain B1-mapping using three-dimensional DREAM"
Philipp Ehses | Tony Stöcker
- Paper: https://onlinelibrary.wiley.com/doi/abs/10.1002/mrm.27773
- Written in: Python
- Original repository: https://gitlab.com/pehses/3dream-example
- Notebook factory repo: https://github.com/Notebook-Factory/3Dream_book
- "Final" product: 3Dream_book
- Binder: ✔️
2: "A gradient optimization toolbox for general purpose time‐optimal MRI gradient waveform design"
Michael Loecher | Daniel B. Ennis
- Paper: https://onlinelibrary.wiley.com/doi/full/10.1002/mrm.28384
- Written in: Python
- Original repository: https://github.com/cmr-group/gropt
- Notebook factory repo: https://github.com/Notebook-Factory/gropt_book
- "Final" product: gropt_book
- Binder: ✔️
3: "Automatic In-line Quantitative Myocardial Perfusion Mapping: processing algorithm and implementation"
Hui Xue | Peter Kellman
- Paper: https://onlinelibrary.wiley.com/doi/abs/10.1002/mrm.27954
- Written in: Python
- Original repository: https://github.com/xueh2/QPerf
- Notebook factory repo: https://github.com/Notebook-Factory/QPerf_book
- "Final" product: Qref_book
- Binder: ✔️
4: "Deep learning how to fit an intravoxel incoherent motion model to diffusion‐weighted MRI"
Sebastiano Barbieri | Harriet C. Thoeny
- Paper: https://onlinelibrary.wiley.com/doi/abs/10.1002/mrm.27910
- Written in: Python
- Original repository: https://github.com/sebbarb/deep_ivim
- Notebook factory repo: https://github.com/Notebook-Factory/deep_ivim_book
- "Final" product: deep_ivim_book
- Binder: ✔️
5: "The use of Fourier‐domain analyses for unwrapping phase images of low SNR"
Nan‐kuei Chen | Pei‐Hsin Wu
- Paper: https://onlinelibrary.wiley.com/doi/abs/10.1002/mrm.27719
- Written in: Julia
- Original repository: https://github.com/nankueichen/Fourier_space_phase_unwrapping
- Notebook factory repo: https://github.com/Notebook-Factory/PhaseUnwrapping_book
- "Final" products:
- PhaseUnwrapping_book
- Phase_book (newest Jupyter-book version=0.10.0)
- Binder: ✔️
6: "Time‐optimized 4D phase contrast MRI with real‐time convex optimization of gradient waveforms and fast excitation methods"
Michael Loecher | Daniel B. Ennis
- Paper: https://onlinelibrary.wiley.com/doi/abs/10.1002/mrm.27716
- Written in: Python
- Original repository: https://github.com/mloecher/cvxflow
- Notebook factory repo: https://github.com/Notebook-Factory/cvxflow_book1
- "Final" product: cvxflow_book
- Binder: ✔️
7: "Adaptive slice‐specific z‐shimming for 2D spoiled gradient‐echo sequences"
Martin Soellradl | Christian Langkammer
- Paper: https://onlinelibrary.wiley.com/doi/10.1002/mrm.28468
- Written in: Matlab
- Original repository: https://github.com/neuroimaging-mug/R2s-mapping
- Notebook factory repo: https://github.com/Notebook-Factory/R2s_book
- "Final" product: R2s_book
- Binder: ✔️
Jupyter notebooks and books in development (05-Feb-2021)
The issue contains all the notebooks (related to MRM papers) that are currently in development by Notebook Factory;
Currently, we have around 11 articles (7 jupyter books and 4 notebooks).