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Novartis / EQP-cluster

Unix-based RNA-seq quantification pipeline
Apache License 2.0
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bowtie2-build version incompatible #1

Closed Arkarachai closed 8 years ago

Arkarachai commented 8 years ago

Hi,

I tried to install EQP-cluster and I run into the dependency issue. I have bowtie2 2.2.3 and your program require >=2.0.5; however, the installation still exit. Do you have any recommendation?

Thank you, Chai

sh create-bowtie2-indices.sh Extracting directory exon-pipeline-files create-bowtie2-indices.sh: 287: create-bowtie2-indices.sh: source: not found Please use bowtie2-build version >= 2.0.5. Found version: 2.2.3 ... exiting

sven0schuierer commented 8 years ago

Hi Chai,

Sorry, about that. There was a bug in the script. Please try again with the attached version.

Best regards,

Sven

From: Arkarachai Fungtammasan [mailto:notifications@github.com] Sent: Monday, November 16, 2015 8:36 PM To: Novartis/EQP-cluster Subject: [EQP-cluster] bowtie2-build version incompatible (#1)

Hi,

I tried to install EQP-cluster and I run into the dependency issue. I have bowtie2 2.2.3 and your program require >=2.0.5; however, the installation still exit. Do you have any recommendation?

Thank you, Chai

sh create-bowtie2-indices.sh Extracting directory exon-pipeline-files create-bowtie2-indices.sh: 287: create-bowtie2-indices.sh: source: not found Please use bowtie2-build version >= 2.0.5. Found version: 2.2.3 ... exiting

— Reply to this email directly or view it on GitHubhttps://github.com/Novartis/EQP-cluster/issues/1.

Arkarachai commented 8 years ago

Hi Sven, Thank you for your prompt reply. I cannot see the attached version. However, I try with bowtie 2.0.5 and it seems to work fine.

Thank you, Chai