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Novartis / cellxgene-gateway

Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
Apache License 2.0
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Cannot install by any way #64

Closed LuciaWL001 closed 2 years ago

LuciaWL001 commented 2 years ago

Hi, I tried the option 1 and 1 in Install Cellxgene-gateway setion, but cannot install due to AttributeError: type object 'Distribution' has no attribute '_finalize_feature_opts'. Then I tried the Development install, and in the step 3 got the same error. Please help to resolve it. Thank you~

alokito commented 2 years ago

Hi Lucia! This seems similar to issue #55. The solution there was to run pip install --upgrade pip after activating the venv, but before installing cellxgene-gateway. I found I also had to downgrade markupsafe with pip install markupsafe==2.0.1 after installing cellxgene-gateway. I am not sure why python dependency management is such a headache! Let me know if this helps.