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Novartis
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scar
scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
https://scar-tutorials.readthedocs.io/en/main/
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Questions and parameter optimization running scAR on CITEseq data
#93
LucHendriks
closed
3 months ago
1
ci: version bump to 0.7.0
#92
CaibinSh
closed
3 months ago
0
Develop
#91
CaibinSh
closed
3 months ago
0
Develop
#90
CaibinSh
closed
3 months ago
0
ci: version bump to 0.7.0
#89
CaibinSh
closed
3 months ago
0
ci: version bump to version 0.7.0
#88
CaibinSh
closed
3 months ago
0
ci: version bump to version 0.7.0
#87
CaibinSh
closed
3 months ago
0
fix(workflow): update semantic release
#86
CaibinSh
closed
3 months ago
0
ci: version bump to v0.7.0
#85
CaibinSh
closed
3 months ago
0
update semantic release
#84
CaibinSh
closed
3 months ago
0
Develop
#83
CaibinSh
closed
3 months ago
0
Develop
#82
CaibinSh
closed
3 months ago
0
Run time on GPU seems to be throttled by CPU
#81
LucHendriks
closed
3 months ago
6
Logging bug when GPU is available it logs CPU is available when training model
#80
LucHendriks
closed
3 months ago
1
Method .A removed in latest Scipy version 1.14.0
#79
LucHendriks
closed
3 months ago
1
Compatibility issue with scipy>=1.14
#78
yalayoubi
closed
4 months ago
1
AttributeError: 'SparseCSRView' object has no attribute 'A'
#77
speed090
closed
4 months ago
3
update installation
#76
CaibinSh
closed
6 months ago
0
Develop
#75
CaibinSh
closed
6 months ago
0
refactor codes (#73)
#74
CaibinSh
closed
6 months ago
0
refactor codes
#73
CaibinSh
closed
6 months ago
0
Conflict between pytorch and scar because of setuptools
#72
recursivelymanan
closed
5 months ago
4
Develop
#71
CaibinSh
closed
6 months ago
0
Develop
#70
CaibinSh
closed
6 months ago
0
fix: update python=3.8.6 -> python=3.10 to fix numpy & pandas conflict
#69
CaibinSh
closed
6 months ago
2
Version 0.5.2 ImportError caused by pandas/numpy conflict
#68
recursivelymanan
closed
6 months ago
3
Develop
#67
CaibinSh
closed
1 year ago
0
sgRNA assignment
#66
hanhuajun40
closed
1 year ago
5
feat: add a feature/tutorial for denoising scATACseq
#65
CaibinSh
closed
1 year ago
0
install issue
#64
hanhuajun40
closed
1 year ago
2
Default clip_to_obs to False
#63
CaibinSh
closed
1 year ago
0
Fine tuning guide assignment
#62
kvshams
closed
1 year ago
2
new release
#61
CaibinSh
closed
1 year ago
0
clip the predicted ambient counts
#60
CaibinSh
closed
1 year ago
0
Sparsity values for mRNA decontamination?
#59
cnk113
closed
2 years ago
2
Implementation in scvi-tools
#58
ricomnl
closed
2 years ago
2
feat(main): support .h5 files by the command line tool
#57
CaibinSh
closed
2 years ago
0
Develop
#56
CaibinSh
closed
2 years ago
0
merge develop to main
#55
CaibinSh
closed
2 years ago
0
perf: add a setup_anndata method
#54
CaibinSh
closed
2 years ago
0
Positive-valued denoising results for ADTs with raw 0 counts
#53
diegoalexespi
closed
2 years ago
2
BiocondaBot not triggered
#52
CaibinSh
closed
2 years ago
7
merge develop into main
#51
CaibinSh
closed
2 years ago
0
ci(inference): round the counts using stochastic rounding
#50
CaibinSh
closed
2 years ago
0
Add option for stochastic rounding to integer
#49
CaibinSh
closed
2 years ago
0
Add option for stochastic rounding to integer
#48
mdmanurung
closed
2 years ago
0
Stochastic rounding to integers for downstream use in TotalVI/SCVI
#47
mdmanurung
closed
2 years ago
9
Number of training epochs + batch size
#46
KalinNonchev
closed
2 years ago
1
Chore(datasets): delete dataset folder
#45
CaibinSh
closed
2 years ago
0
feat(scar.model): addition of a sparsity parameter
#44
CaibinSh
closed
2 years ago
0
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