error compiling vignette nlmixr_theo.Rmd when running devtools::build("xgxr-master")

margoal1 commented 5 years ago

iamstein commented 5 years ago

This issue was fixed in the master branch (I forgot to create/check-out an Andy branch). But, "build" may still not work, but this time for other, weird Rmarkdowny reasons


> > devtools::build()
✔  checking for file ‘/Users/steinanf/GitHub/xgxr/DESCRIPTION’ ...
─  preparing ‘xgxr’: (1s)
✔  checking DESCRIPTION meta-information ...
─  installing the package to build vignettes
E  creating vignettes (4.2s)

   Attaching package: 'dplyr'

   The following object is masked from 'package:gridExtra':

       combine

   The following objects are masked from 'package:stats':

       filter, lag

   The following objects are masked from 'package:base':

       intersect, setdiff, setequal, union

   pandoc: Could not fetch PK_Multiple_Ascending_Dose_files/figure-html/conc_vs_time_overview%20-1.png
   PK_Multiple_Ascending_Dose_files/figure-html/conc_vs_time_overview -1.png: openBinaryFile: does not exist (No such file or directory)
   Error: processing vignette 'PK_Multiple_Ascending_Dose.Rmd' failed with diagnostics:
   pandoc document conversion failed with error 67
   Execution halted
Error in processx::run(bin, args = real_cmdargs, stdout_line_callback = real_callback(stdout),  : 
  System command error

mattfidler commented 4 years ago

Did you fix this?

iamstein commented 4 years ago

@mattfidler I believe this was fixed back in July 8.

mattfidler commented 4 years ago

Thanks Andy

Novartis / xgxr

error compiling vignette nlmixr_theo.Rmd when running devtools::build("xgxr-master") #1