NrgXnat / oasis-scripts

Example download scripts for the OASIS3 project
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Can't download OASIS3_AV1451 files #42

Closed ngonzalezigc closed 6 months ago

ngonzalezigc commented 6 months ago

Initially I couldn't download PET scans from OASIS3 Tau using the updated scripts due to the change from XNAT to NITRC. I was using the script download_scans/download_oasis_scans.sh like such download_oasis_scans.sh my_file.csv output/directory my_user ALL OASIS3_AV1451. However, the script didn't take into account that I specified the Tau project id and used OASIS3. After looking for a while in the code I noticed that you use a variable called EXPERIMENT_LABEL, which isn't defined before, so I changed it locally to EXPERIMENT_ID to fix it. I think this error replicates across other scripts.

sarahkeefe commented 6 months ago

Oops! Thank you! Corrected the scan download scripts - let me know if you run into any other issues.