Initially I couldn't download PET scans from OASIS3 Tau using the updated scripts due to the change from XNAT to NITRC. I was using the script download_scans/download_oasis_scans.sh like such download_oasis_scans.sh my_file.csv output/directory my_user ALL OASIS3_AV1451. However, the script didn't take into account that I specified the Tau project id and used OASIS3. After looking for a while in the code I noticed that you use a variable called EXPERIMENT_LABEL, which isn't defined before, so I changed it locally to EXPERIMENT_ID to fix it. I think this error replicates across other scripts.
Initially I couldn't download PET scans from OASIS3 Tau using the updated scripts due to the change from XNAT to NITRC. I was using the script
download_scans/download_oasis_scans.sh
like suchdownload_oasis_scans.sh my_file.csv output/directory my_user ALL OASIS3_AV1451
. However, the script didn't take into account that I specified the Tau project id and used OASIS3. After looking for a while in the code I noticed that you use a variable calledEXPERIMENT_LABEL
, which isn't defined before, so I changed it locally toEXPERIMENT_ID
to fix it. I think this error replicates across other scripts.