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OATML-Markslab
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ProteinNPT
Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
MIT License
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fine-tuning with more protein sequences
#18
avilella
opened
1 month ago
1
Code for fitness conditional sampling
#17
TheMatrixMaster
opened
3 months ago
0
How to optimize the hyperparameter in proteinNPT training process
#16
Meron-TANG
closed
3 months ago
2
Error when running zero_shot_fitness_tranception.py: No such file or directory
#15
BoyangLi-NKU
closed
3 months ago
2
num_MSA_sequences
#14
ZhummCrow
closed
3 months ago
2
Updates to modulo and contiguous schemes for a subset of the single substitution DMS assays
#13
pascalnotin
closed
5 months ago
0
Error loading main sequence embeddings
#12
dc2211
closed
3 months ago
13
Rebase errors
#11
loodvn
closed
6 months ago
0
TMP: Checking diffs between master and rebased branch commits
#10
loodvn
closed
6 months ago
0
Fast weights and pipeline cleanup
#9
loodvn
closed
6 months ago
1
How to use trained model from pipeline.sh to do prediction
#8
Maxwell-downtown
closed
6 months ago
4
pipeline.sh----['MSA_Transformer_ensemble'] not in index
#7
Maxwell-downtown
closed
6 months ago
7
MSA processing error
#6
dc2211
closed
6 months ago
42
The additional DMS assays added in the article has not been released
#5
Meron-TANG
closed
7 months ago
2
How to perform a mutation scan?
#4
PKU-Leroy
closed
7 months ago
3
unable to run embeddings_sub.sh
#3
adalisan
closed
7 months ago
3
How can I reproduce the paper results?
#2
jxzly
closed
9 months ago
2
How to use this code?
#1
linghuichen
closed
7 months ago
3