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OBOFoundry / COB

An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)
https://obofoundry.github.io/COB
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Have a mapping file to non-OBO ontologies/vocabularies in SSSOM #161

Open StroemPhi opened 3 years ago

StroemPhi commented 3 years ago

I propose to have a SSSOM file or something similar in the repo which contains mappings to other non-OBO ontologies and vocabularies, so that data mapping would be easier, e.g. mappings to SIO, schema.org, WikiData etc.

matentzn commented 3 years ago

Its not final, but its being evolved:

https://github.com/OBOFoundry/COB/blob/master/cob-to-external.tsv

Is that what you are looking for?

StroemPhi commented 3 years ago

@matentzn if I understood the rationale behind cob-to-external.tsv right, this TSV and the corresponding OWL is meant for the mapping between COB and only the other OBO ontologies. If not, than I guess this is the place to put the mappings of the above mentioned DBs/schemas. If yes, another mapping file in the COB repo to those non-OBO external sources would be very useful.

matentzn commented 3 years ago

Ah yes, I understand now. Yes, you are right, this would probably be better captured in a separate mapping file. Do you want to use this ticket here to collect some mappings? once they reach 20, I will create the sssom file. Good idea!

StroemPhi commented 3 years ago

see also https://github.com/OBOFoundry/COB/issues/22 & https://github.com/OBOFoundry/COB/issues/16 & https://github.com/OBOFoundry/COB/issues/15

cmungall commented 2 years ago

I created a mapping a while ago but it seems to have been lost in some repositry refactoring..

matentzn commented 2 years ago

I looked through many PRs and issues and commits, but cannot find anything.. Possible that it was in a different repo? The major refactoring (ODK) did not remove any TSV files from COB..