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OBOFoundry / COB

An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)
https://obofoundry.github.io/COB
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make release with exposure of organism class #210

Open wdduncan opened 2 years ago

wdduncan commented 2 years ago

In #192 we approved the the addition of the exposure of organism class. This class is now present in cob-edit. In RO PR 606 we are wanting to use the exposure of organism class.

Are there plans to make a release of COB, so that other ontologies can properly reference this class?

@cmungall @bpeters42 @matentzn

matentzn commented 2 years ago

Unfortunately there still seem to be problems with the exposure class. Unfortunately also these problems are vocalised on various private chats.

wdduncan commented 2 years ago

I thought the PR was approved and merged b/c we (the COB collective) had decided that the exposure to organism class was deemed adequate.

Am I mistaken?

matentzn commented 2 years ago

I think it's fine, but give it a week for the dust to settle. I think the word "entity" in the definition is causing concern people make mistake the class for being restricted to exposure to physical entities..

bpeters42 commented 2 years ago

I don't think I am part of any private chat regarding this (if I am someone please link me to it). I suspect Bill isn't either. So it would be quite helpful if any problems that lead people to object to the minimal compromise we have so far will be added to the public discussion.

On Thu, Aug 18, 2022 at 12:35 PM Nico Matentzoglu @.***> wrote:

Unfortunately there still seem to be problems with the exposure class. Unfortunately also these problems are vocalised on various private chats.

— Reply to this email directly, view it on GitHub https://github.com/OBOFoundry/COB/issues/210#issuecomment-1219875345, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADJX2IXASSM5PPYVVXHYXNDVZ2F6ZANCNFSM5656GPQA . You are receiving this because you were mentioned.Message ID: @.***>

-- Bjoern Peters Professor La Jolla Institute for Immunology 9420 Athena Circle La Jolla, CA 92037, USA Tel: 858/752-6914 Fax: 858/752-6987 http://www.liai.org/pages/faculty-peters

wdduncan commented 2 years ago

@bpeters42 No, I am not part of such conversations :(
It would be great if we can make a release so that I close the related RO issue.

matentzn commented 2 years ago

Forget my comment. Since no one spoke up in public, just move forward now..

wdduncan commented 2 years ago

Thanks @matentzn
Do you know who is responsible for making a COB release?